- Abbe School of Photonics
- International Leibniz Research School for Microbial and Biomolecular Interactions
- International Leibniz Research School on Ageing and Age-Related Diseases
- International Max Planck Research School - The Exploration of Ecological Interactions with Molecular and Chemical Techniques
- International Max Planck Research School for Global Biogeochemical Cycles
- Jena School for Microbial Communication
- Jena International Graduate School of Molecular Medicine
- Max Planck School of Photonics